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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01016882.1_2166_2287_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2166 - 2287
Intron Length:
122

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGGGCC
5'SS Class:
major
3'SS Sequence:
GCTTCCCCTCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTGAC
U12 Branch Point Sequence:
TGGTGCTGACGG
Flanking Amino Acid:
LRARRREREAALRKARRQEQ
Intron Amino Acid Position:
29

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.6
0.58
1
65.5
34.2
Major BPS
66.3
0.4
1.1
57
41.8
Major PPT
76.3
0.59
0.8
66.3
35.8
Minor 5ss
23.6
-3
3.5
32.2
42.8
Minor BPS
39.5
-0.9
2.3
44.43
47.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026381
Chromosome:
PEDO01016882.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033111
2081 - 2743
663