Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01016900.1_48757_49383_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

48757 - 49383

Intron Length:

627

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AGT|GTAAGTATA

5'SS Class:

major

3'SS Sequence:

TTGTTTTTTTTAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTGTAT

U12 Branch Point Sequence:

TTTTTTGTATGT

Flanking Amino Acid:

CLLHQFIEKKFKDDSNHTIG

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

77.4

0.65

1.1

80.1

34.8

Major BPS

71.5

0.53

1.4

71.7

44.6

Major PPT

88.8

0.87

0.7

88.9

28.2

Minor 5ss

41.3

-1

2.8

52.2

44.4

Minor BPS

46.4

-0.1

2.4

74.38

43.4

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000018827

Chromosome:

PEDO01016900.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000048438

40803 - 58781

17979