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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01016900.1_49499_50409_F

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
49499 - 50409
Intron Length:
911

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGCCCTTT
5'SS Class:
weak_major
3'SS Sequence:
AATTCTGTTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTAAT
U12 Branch Point Sequence:
ATATTTGTAATT
Flanking Amino Acid:
IWDTAGQERFRSVTRSYYRG
Intron Amino Acid Position:
76

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
64.8
0.35
1.2
65.9
42.4
Major BPS
84.4
0.85
1.1
84
34.5
Major PPT
77.5
0.62
1
73.8
40.7
Minor 5ss
48.8
-0.1
3.1
73.3
43.6
Minor BPS
54.8
0.23
1.9
74.15
37.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018827
Chromosome:
PEDO01016900.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048438
40803 - 58781
17979