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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01016900.1_50473_52256_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
50473 - 52256
Intron Length:
1784

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
ATTTTCTTCGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
TGTATTCTAATA
Flanking Amino Acid:
AGALLVYDITSRETYNALTN
Intron Amino Acid Position:
97

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.9
1.01
0.7
86
23.7
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
85.7
0.8
0.7
81.2
30
Minor 5ss
32.8
-2
2.9
39.7
45.8
Minor BPS
52
0.06
1.6
64.98
35.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018827
Chromosome:
PEDO01016900.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048438
40803 - 58781
17979