Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01016900.1_52412_53360_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

52412 - 53360

Intron Length:

949

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTAAGTAGT

5'SS Class:

strong_major

3'SS Sequence:

GTGTCAAATACAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTGAGAT

U12 Branch Point Sequence:

CTTGCCTTGAGA

Flanking Amino Acid:

LEASRFAQENELMFLETSAL

Intron Amino Acid Position:

149

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

89.4

0.93

0.8

83.5

Major BPS

0.35

1.3

60.7

45.9

Major PPT

63.7

0.31

1.1

55.8

42.9

Minor 5ss

37.6

-1.4

2.8

48.3

42.5

Minor BPS

0.31

1.8

69.88

42.9

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000018827

Chromosome:

PEDO01016900.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000048438

40803 - 58781

17979