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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01016900.1_65608_67896_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
65608 - 67896
Intron Length:
2289

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TCTGCTCTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTAAC
U12 Branch Point Sequence:
GTAACACTAACT
Flanking Amino Acid:
NVCASASVNEIHESALRAKN
Intron Amino Acid Position:
192

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
86
23.6
Major BPS
74.5
0.61
1.1
75.6
36.6
Major PPT
82
0.72
0.8
73.1
37.3
Minor 5ss
36.8
-1.5
2.7
42.6
38.4
Minor BPS
50.6
0.1
2
73.32
42.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030395
Chromosome:
PEDO01016900.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026442
62487 - 75267
12781