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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01016913.1_575_766_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
575 - 766
Intron Length:
192

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGAGTCCC
5'SS Class:
strong_major
3'SS Sequence:
TCTCTTTTCCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CCCAGAT
U12 Branch Point Sequence:
TCTGCTCCGAGC
Flanking Amino Acid:
KGYTEENTIFATRIQFFAIE
Intron Amino Acid Position:
103

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
0.9
67.6
37.6
Major BPS
49.7
-0
1.1
46.3
37.5
Major PPT
86.3
0.82
0.7
79.8
32.2
Minor 5ss
30.2
-2.3
2.8
34
35
Minor BPS
39.8
-0.8
2
49.95
41.4

Associated Gene:

Gene:
PBDC1
Ensembl Gene ID:
ENSAPLG00000013569
Chromosome:
PEDO01016913.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014132
52 - 1026
975