About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01016938.1_1472_2001_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1472 - 2001
Intron Length:
530

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACTGGGT
5'SS Class:
major
3'SS Sequence:
TTTTTTTCCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTGAC
U12 Branch Point Sequence:
TTTTTTTCCACA
Flanking Amino Acid:
MVNGGAEKGARIPIILVGNK
Intron Amino Acid Position:
11

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.4
0.46
1.1
60.8
43.9
Major BPS
69.1
0.47
1
60.7
37.6
Major PPT
91.4
0.93
0.6
87.9
22.3
Minor 5ss
29.9
-2.3
3.8
47.5
47.9
Minor BPS
55.3
0.16
2
74.67
37.4

Associated Gene:

Gene:
RHOT2
Ensembl Gene ID:
ENSAPLG00000003587
Chromosome:
PEDO01016938.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003741
1284 - 9775
8492