Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01016938.1_2111_2552_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

2111 - 2552

Intron Length:

442

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTGAGGCAC

5'SS Class:

strong_major

3'SS Sequence:

TTTGCATCCTCAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTGCAT

U12 Branch Point Sequence:

TTCCTTTGCATC

Flanking Amino Acid:

QFSEIETCVECSAKNLKNIS

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.8

0.9

69.1

37.5

Major BPS

0.62

1.4

85.7

34.9

Major PPT

77.1

0.61

0.9

74.3

35.5

Minor 5ss

25.6

-2.8

3.1

31.9

42.9

Minor BPS

44.7

-0.4

1.8

55.41

37.6

Associated Gene:

Gene:

RHOT2

Ensembl Gene ID:

ENSAPLG00000003587

Chromosome:

PEDO01016938.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000003741

1284 - 9775

8492