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Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01016938.1_2655_2979_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

2655 - 2979

Intron Length:

325

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAGGAAGC

5'SS Class:

strong_major

3'SS Sequence:

TGGTTCCTTGCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTTAT

U12 Branch Point Sequence:

TTTTTATCACCA

Flanking Amino Acid:

APLYDPEEKQLRPACARALT

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.73

69.9

41.1

Major BPS

96.5

1.15

0.6

34.2

Major PPT

0.67

0.9

73.7

36.9

Minor 5ss

32.4

-2

3.2

43.2

Minor BPS

50.1

-0

72.43

39.5

Associated Gene:

Gene:

RHOT2

Ensembl Gene ID:

ENSAPLG00000003587

Chromosome:

PEDO01016938.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000003741

1284 - 9775

8492