Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01016938.1_5984_6313_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5984 - 6313

Intron Length:

330

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GCG|GTGAGTGGC

5'SS Class:

strong_major

3'SS Sequence:

TCCTCCGTGGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GTCTGAG

U12 Branch Point Sequence:

CTGTCTGAGACA

Flanking Amino Acid:

LQAFLGRSLAAQRETPGEPS

Intron Amino Acid Position:

346

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.7

0.72

Major BPS

49.8

-0

1.7

51.1

46.3

Major PPT

68.5

0.42

64.5

36.5

Minor 5ss

28.1

-2.5

3.1

35.3

41.4

Minor BPS

44.3

-0.4

2.3

56.99

43.4

Associated Gene:

Gene:

RHOT2

Ensembl Gene ID:

ENSAPLG00000003587

Chromosome:

PEDO01016938.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000003741

1284 - 9775

8492