Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01016949.1_1180_2028_F

Intron Information:

Intron Rank:

135767

Intron Class:

major

Intron Phase:

Intron Coordinates:

1180 - 2028

Intron Length:

849

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AGA|GTATGTATT

5'SS Class:

major

3'SS Sequence:

CTTTGTTCTGCAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATGTCAC

U12 Branch Point Sequence:

TGCTGGGTGATC

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.52

1.1

77.2

37.7

Major BPS

66.1

0.4

1.2

69.1

37.9

Major PPT

0.81

0.8

80.7

31.4

Minor 5ss

-0.1

2.5

40.2

Minor BPS

36.8

-1

2.7

49.31

42.1

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000023102

Chromosome:

PEDO01016949.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000045290

21 - 3241

3221