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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01016952.1_15916_16127_R

Intron Information:

Intron Rank:
152375
Intron Class:
major
Intron Phase:
Intron Coordinates:
15916 - 16127
Intron Length:
212

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGAAACT
5'SS Class:
major
3'SS Sequence:
TCTTTTGCAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTAAT
U12 Branch Point Sequence:
TCTTTTGCAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.8
0.56
1
71.4
38.4
Major BPS
85.7
0.89
0.8
84
22.2
Major PPT
77.1
0.61
0.9
73.4
35.9
Minor 5ss
34.1
-1.8
3.3
49.7
46.3
Minor BPS
48.6
-0.1
2.2
66.33
40.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029581
Chromosome:
PEDO01016952.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023702
10124 - 16289
6166
ENSAPLT00000046942
13853 - 16289
2437
ENSAPLT00000025924
10669 - 16289
5621