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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01016952.1_3496_4827_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3496 - 4827
Intron Length:
1332

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTAACCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTTAA
U12 Branch Point Sequence:
GTTTGTTTAACC
Flanking Amino Acid:
VPSSELQIYTWMDATLKELT
Intron Amino Acid Position:
61

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.4
0.81
0.9
76.7
31.8
Major BPS
72.1
0.55
1.1
63.7
43.9
Major PPT
73.8
0.54
1
67.1
42.9
Minor 5ss
30
-2.3
3.2
38.4
40.8
Minor BPS
69.8
0.6
1.7
78.83
36.8

Associated Gene:

Gene:
SAP18
Ensembl Gene ID:
ENSAPLG00000028679
Chromosome:
PEDO01016952.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031436
3124 - 5832
2709