Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01016952.1_4951_5347_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4951 - 5347

Intron Length:

397

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TAG|GTAAACGGC

5'SS Class:

major

3'SS Sequence:

CTCCTGCCTGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CCTTTAT

U12 Branch Point Sequence:

CCGCCTTTATCT

Flanking Amino Acid:

VFTDLKRPGYRVKEIGSTMS

Intron Amino Acid Position:

102

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

78.1

0.66

63.9

41.2

Major BPS

71.5

0.54

1.1

63.3

42.8

Major PPT

75.6

0.58

0.8

68.9

31.6

Minor 5ss

-1.6

3.4

50.2

46.4

Minor BPS

52.7

0.16

1.7

64.5

46.3

Associated Gene:

Gene:

SAP18

Ensembl Gene ID:

ENSAPLG00000028679

Chromosome:

PEDO01016952.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000031436

3124 - 5832

2709