Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01016963.1_313_1055_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

313 - 1055

Intron Length:

743

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTCAGAGCC

5'SS Class:

major

3'SS Sequence:

CTTCTGCACACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GTTGCAT

U12 Branch Point Sequence:

TACCCCAAAACC

Flanking Amino Acid:

SSREIAVACQAESRCANLSH

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

75.2

0.59

1.3

68.7

37.5

Major BPS

57.3

0.18

1.6

71.4

45.1

Major PPT

70.9

0.47

0.9

64.9

35.5

Minor 5ss

27.1

-2.6

3.1

34.4

41.3

Minor BPS

48.8

-0.1

62.16

42.7

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000000837

Chromosome:

PEDO01016963.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000000810

21 - 1475

1455