Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01016967.1_2229_2319_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

2229 - 2319

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTACCGGGG

5'SS Class:

major

3'SS Sequence:

GCTGTCCCCGCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GCCTCAC

U12 Branch Point Sequence:

CCGGCCTCACGG

Flanking Amino Acid:

EQGERVYTLKKTSPSGSPTF

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

63.7

0.32

1.3

49.8

46.9

Major BPS

54.7

0.12

1.2

59.2

39.1

Major PPT

69.3

0.43

0.9

34.8

Minor 5ss

33.1

-1.9

3.7

46.9

48.5

Minor BPS

-1

34.2

46.5

Associated Gene:

Gene:

NOP10

Ensembl Gene ID:

ENSAPLG00000018735

Chromosome:

PEDO01016967.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000035972

1924 - 3411

1488