Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01016977.1_2066_2211_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

2066 - 2211

Intron Length:

146

Sequence Information:

Terminal Dinucleotides:

GC-AG

5'SS Sequence:

TAG|GCACGTTGT

5'SS Class:

strong_major

3'SS Sequence:

CCGTGTCCACCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

AGCTGAT

U12 Branch Point Sequence:

TGATGCCCACCT

Flanking Amino Acid:

LDGRDPNGYVGCLWSICGIH

Intron Amino Acid Position:

275

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

90.1

0.95

0.9

74.6

41.4

Major BPS

67.4

0.43

1.1

57.1

41.8

Major PPT

63.5

0.3

55.1

40.2

Minor 5ss

30.5

-2.2

4.1

49.7

46.5

Minor BPS

41.1

-0.5

2.3

62.85

46.4

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000015887

Chromosome:

PEDO01016977.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000042864

21 - 3070

3050

ENSAPLT00000016566

21 - 3070

3050