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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01016992.1_18816_19281_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
18816 - 19281
Intron Length:
466

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGACGGCA
5'SS Class:
major
3'SS Sequence:
GTCTCTGGCTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GACTGAC
U12 Branch Point Sequence:
TTTCGCCTGTCT
Flanking Amino Acid:
RQLSHLQQHTRIHTGDRPYK
Intron Amino Acid Position:
300

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.4
0.5
1.2
62.8
37.7
Major BPS
55.9
0.15
1.2
49
38
Major PPT
66.8
0.38
1
64.6
41.3
Minor 5ss
29.6
-2.3
3.4
38.8
46.5
Minor BPS
37.7
-0.8
3.7
73.63
43.2

Associated Gene:

Gene:
ZNF362
Ensembl Gene ID:
ENSAPLG00000029467
Chromosome:
PEDO01016992.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043127
8366 - 20125
11760
ENSAPLT00000038942
7518 - 19907
12390
ENSAPLT00000006891
8366 - 19907
11542
ENSAPLT00000048037
8507 - 20671
12165
ENSAPLT00000044634
7518 - 20125
12608