Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01016992.1_24456_24596_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

24456 - 24596

Intron Length:

141

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAGCGCCC

5'SS Class:

major

3'SS Sequence:

CCGCGCCCCCCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCTCTC

U12 Branch Point Sequence:

GTTTCTCTCTCT

Flanking Amino Acid:

DSEMEEPYMQESKEEGNPPK

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

64.1

0.33

1.3

55.8

40.2

Major BPS

33.6

-1

4.2

71.3

36.7

Major PPT

60.8

0.24

0.9

49.9

34.2

Minor 5ss

36.2

-1.6

3.5

51.2

45.5

Minor BPS

-0.7

3.6

73.15

43.8

Associated Gene:

Gene:

PHC2

Ensembl Gene ID:

ENSAPLG00000006579

Chromosome:

PEDO01016992.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000006816

23483 - 24997

1515