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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01017017.1_1408_1496_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1408 - 1496
Intron Length:
89

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGATGG
5'SS Class:
major
3'SS Sequence:
CCCGGTGCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GGCTGAC
U12 Branch Point Sequence:
TGACCCCCACCC
Flanking Amino Acid:
LLNWCVQIAKGMSYLEEVRL
Intron Amino Acid Position:
240

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.2
0.69
1
63.4
43.8
Major BPS
49.4
-0
1.3
42.8
41.8
Major PPT
64.7
0.33
1
56.6
38.8
Minor 5ss
35.9
-1.6
3.3
47.1
48.3
Minor BPS
43.2
-0.5
2
55.2
42

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019422
Chromosome:
PEDO01017017.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029150
171 - 2864
2694