Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01017017.1_394_615_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

394 - 615

Intron Length:

222

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTC|GTGAGTGGG

5'SS Class:

major

3'SS Sequence:

TCCTGTCCCGCAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CCGTCAC

U12 Branch Point Sequence:

CCCCCCCCAACC

Flanking Amino Acid:

CQLCPTNCTHSQVTSIIAGV

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

64.3

0.34

1.3

55.8

43.4

Major BPS

1.2

54.6

40.8

Major PPT

74.6

0.55

0.8

68.9

31.6

Minor 5ss

28.2

-2.5

3.1

31.7

36.8

Minor BPS

45.9

-0.3

1.9

52.85

44.5

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000019422

Chromosome:

PEDO01017017.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000029150

171 - 2864

2694