About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01017024.1_298_1378_F

Intron Information:

Intron Rank:
140266
Intron Class:
major
Intron Phase:
Intron Coordinates:
298 - 1378
Intron Length:
1081

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGGGTTTG
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCCCCGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACCCCAT
U12 Branch Point Sequence:
GTGACCCCATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.5
0.77
0.9
74.8
38.1
Major BPS
50.9
0.02
1.3
60.4
37.5
Major PPT
82.5
0.73
0.7
77.7
24.2
Minor 5ss
37
-1.5
3.2
48.2
47.9
Minor BPS
42.2
-0.5
2
58.75
44.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025449
Chromosome:
PEDO01017024.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021802
21 - 2546
2526