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Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01017099.1_12481_15805_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

12481 - 15805

Intron Length:

3325

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAATTACC

5'SS Class:

strong_major

3'SS Sequence:

TCTCTTTCTGCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TGCTCAT

U12 Branch Point Sequence:

AAATGCTCATTC

Flanking Amino Acid:

NPGNPDVFHEKYTTSMDFVR

Intron Amino Acid Position:

381

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.3

0.86

0.9

80.7

31.5

Major BPS

79.7

0.74

79.6

35.6

Major PPT

88.6

0.87

0.6

84.3

23.6

Minor 5ss

37.1

-1.5

2.6

47.1

41.2

Minor BPS

43.3

-0.5

51.22

39.7

Associated Gene:

Gene:

COG2

Ensembl Gene ID:

ENSAPLG00000015967

Chromosome:

PEDO01017099.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000016685

170 - 26942

26773