About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01017099.1_1360_2314_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1360 - 2314
Intron Length:
955

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGAGAG
5'SS Class:
major
3'SS Sequence:
TTCCTTTATTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TTCTCATTAATC
Flanking Amino Acid:
LEGALSESTQKYYETVSDVL
Intron Amino Acid Position:
684

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
68.8
36.3
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
81
0.7
0.8
81.2
29.7
Minor 5ss
31.5
-2.1
3.4
38.6
40.8
Minor BPS
72.6
0.69
1.5
79.43
36

Associated Gene:

Gene:
COG2
Ensembl Gene ID:
ENSAPLG00000015967
Chromosome:
PEDO01017099.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016685
170 - 26942
26773