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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01017099.1_15933_17231_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
15933 - 17231
Intron Length:
1299

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAATACC
5'SS Class:
strong_major
3'SS Sequence:
ACTTTTATTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
AATAATTAAACT
Flanking Amino Acid:
LREVTGGAISSEKADIVPGY
Intron Amino Acid Position:
338

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
0.9
77.3
30.8
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
84.4
0.77
0.8
81.9
33.7
Minor 5ss
30.9
-2.2
2.7
37.4
40
Minor BPS
49.7
0.05
1.8
69.42
41.1

Associated Gene:

Gene:
COG2
Ensembl Gene ID:
ENSAPLG00000015967
Chromosome:
PEDO01017099.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016685
170 - 26942
26773