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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01017099.1_17357_20431_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17357 - 20431
Intron Length:
3075

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGATAA
5'SS Class:
strong_major
3'SS Sequence:
ATCTTCCTGGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TGACATTTAATA
Flanking Amino Acid:
QVLVKPYIDEVIVEEYVQAH
Intron Amino Acid Position:
297

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
0.99
0.8
83
23.8
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
73.6
0.53
1
69.9
36
Minor 5ss
37.3
-1.4
3
46.9
48.4
Minor BPS
56.9
0.21
1.5
63.68
36.2

Associated Gene:

Gene:
COG2
Ensembl Gene ID:
ENSAPLG00000015967
Chromosome:
PEDO01017099.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016685
170 - 26942
26773