Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01017099.1_20612_22479_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

20612 - 22479

Intron Length:

1868

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CCA|GTAGGTATT

5'SS Class:

major

3'SS Sequence:

TTTCTCTTCATAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTAAA

U12 Branch Point Sequence:

TTTTTTTTAAAC

Flanking Amino Acid:

GMPLLDKVRPRIAGITATLQ

Intron Amino Acid Position:

237

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

70.6

0.49

1.1

75.9

39.9

Major BPS

90.4

0.7

90.2

19.3

Major PPT

83.9

0.76

0.6

80.2

25.3

Minor 5ss

42.5

-0.8

3.2

40.2

Minor BPS

76.4

0.81

1.2

82.98

29.8

Associated Gene:

Gene:

COG2

Ensembl Gene ID:

ENSAPLG00000015967

Chromosome:

PEDO01017099.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000016685

170 - 26942

26773