Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01017099.1_22589_23881_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

22589 - 23881

Intron Length:

1293

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAAAACA

5'SS Class:

strong_major

3'SS Sequence:

ATCTCTCTTCCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTCTCAT

U12 Branch Point Sequence:

TTCTCATTATCT

Flanking Amino Acid:

TNELSSLEGNSPLVTGQVLE

Intron Amino Acid Position:

200

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.7

0.77

0.9

76.8

31.6

Major BPS

94.9

1.12

0.6

93.9

14.7

Major PPT

82.2

0.72

0.8

73.5

36.4

Minor 5ss

33.1

-1.9

2.9

41.4

44.7

Minor BPS

65.4

0.56

1.9

85.15

41.2

Associated Gene:

Gene:

COG2

Ensembl Gene ID:

ENSAPLG00000015967

Chromosome:

PEDO01017099.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000016685

170 - 26942

26773