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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01017099.1_8557_12340_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8557 - 12340
Intron Length:
3784

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTGGTATG
5'SS Class:
major
3'SS Sequence:
TTCTATTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATAAC
U12 Branch Point Sequence:
TGATTTATAACA
Flanking Amino Acid:
KWNLPVYFQIRFREIAGAFE
Intron Amino Acid Position:
427

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.3
0.6
1.2
73.9
42.7
Major BPS
77.9
0.69
1
78.3
31.3
Major PPT
89.7
0.89
0.7
88.1
28.7
Minor 5ss
34.3
-1.8
2.9
42.3
44.5
Minor BPS
59.8
0.3
1.6
69.6
36.2

Associated Gene:

Gene:
COG2
Ensembl Gene ID:
ENSAPLG00000015967
Chromosome:
PEDO01017099.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016685
170 - 26942
26773