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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01017112.1_137_292_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
137 - 292
Intron Length:
156

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGATG
5'SS Class:
strong_major
3'SS Sequence:
CCCCCCCCCCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GCTTTAT
U12 Branch Point Sequence:
TGTGCTTTATTC
Flanking Amino Acid:
YWMSRDQRVQDNWAFLYAQR
Intron Amino Acid Position:
91

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.2
0.97
0.8
82.5
37
Major BPS
66.1
0.4
1.3
59.6
46.8
Major PPT
66.9
0.38
0.7
57.1
27.1
Minor 5ss
35.9
-1.6
3.3
47.8
47.9
Minor BPS
56.6
0.19
1.7
66.4
40

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020452
Chromosome:
PEDO01017112.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043919
21 - 1092
1072