Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01017148.1_13882_13963_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

13882 - 13963

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CGG|GTACGGGGG

5'SS Class:

major

3'SS Sequence:

TCCCGTGCTGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGTTCAA

U12 Branch Point Sequence:

TCCTGTTCAACC

Flanking Amino Acid:

DSVLHRARLAGKSVGIVTTT

Intron Amino Acid Position:

194

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

67.6

0.42

1.2

49.8

46.9

Major BPS

75.6

0.64

1.1

77.7

37.1

Major PPT

71.3

0.48

0.9

64.5

36.5

Minor 5ss

27.1

-2.6

3.6

28.8

43.7

Minor BPS

49.6

-0

61.68

44.3

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000023745

Chromosome:

PEDO01017148.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000024853

12904 - 15752

2849