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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01017149.1_2733_2965_R

Intron Information:

Intron Rank:
132597
Intron Class:
major
Intron Phase:
Intron Coordinates:
2733 - 2965
Intron Length:
233

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGCCCC
5'SS Class:
strong_major
3'SS Sequence:
CCGTGCCTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTCAT
U12 Branch Point Sequence:
CCCTCCTCATCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.1
0.87
0.9
69.7
41.3
Major BPS
82.3
0.8
0.9
81.8
30.8
Major PPT
73.6
0.53
0.9
69.1
37
Minor 5ss
39.1
-1.2
3
51.7
45
Minor BPS
52
0.14
1.9
67.57
48.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018578
Chromosome:
PEDO01017149.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022329
116 - 5095
4980