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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01017149.1_3906_4012_R

Intron Information:

Intron Rank:
132600
Intron Class:
major
Intron Phase:
Intron Coordinates:
3906 - 4012
Intron Length:
107

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
GAG|GCAAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TCCCTTTCCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GATAAAT
U12 Branch Point Sequence:
AGTCCCTCAGGT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
98.6
1.15
0.7
90.9
28.7
Major BPS
56.8
0.17
1.2
65.3
38.6
Major PPT
81
0.7
0.7
79.8
25.6
Minor 5ss
35.8
-1.6
4.1
57.8
46.8
Minor BPS
46.4
-0.1
2
65.49
44.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018578
Chromosome:
PEDO01017149.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022329
116 - 5095
4980