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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01017163.1_9346_9709_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9346 - 9709
Intron Length:
364

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGTGTTTC
5'SS Class:
strong_major
3'SS Sequence:
TGTCCCTTCCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTCAT
U12 Branch Point Sequence:
TGCCACTCATGC
Flanking Amino Acid:
LALQGSGAVKVGHVLMQTEF
Intron Amino Acid Position:
25

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
0.8
80.1
28.5
Major BPS
74.8
0.62
0.9
75.3
29.7
Major PPT
77.6
0.62
0.8
69.1
36.9
Minor 5ss
45.4
-0.5
2.7
60.6
44.5
Minor BPS
39
-0.8
2
45.93
42.3

Associated Gene:

Gene:
HLA-DRA
Ensembl Gene ID:
ENSAPLG00000005101
Chromosome:
PEDO01017163.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005285
8376 - 9782
1407