Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01017168.1_1177_1255_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1177 - 1255

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTTCGTGAG

5'SS Class:

major

3'SS Sequence:

CTCTCCGCTGCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

AAAGCAA

U12 Branch Point Sequence:

AGCTGCTTCAGT

Flanking Amino Acid:

GYTAMPVTGTDPNMVNAYMY

Intron Amino Acid Position:

576

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

72.8

0.54

1.2

64.6

41.5

Major BPS

-0.3

1.2

49.8

35.1

Major PPT

75.4

0.57

0.8

31.5

Minor 5ss

27.3

-2.6

31.9

42.6

Minor BPS

44.7

-0.3

2.4

62.41

47.5

Associated Gene:

Gene:

HGS

Ensembl Gene ID:

ENSAPLG00000012661

Chromosome:

PEDO01017168.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000013220

21 - 8308

8288

ENSAPLT00000046582

331 - 8308

7978