Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01017168.1_2781_3140_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

2781 - 3140

Intron Length:

360

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GTG|GTACGTTCA

5'SS Class:

major

3'SS Sequence:

TTTTTCCTCACAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CTCTGAA

U12 Branch Point Sequence:

TTTCTCTGAACG

Flanking Amino Acid:

PAGTLYSPPVNSSAPLAEDI

Intron Amino Acid Position:

280

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

78.8

0.68

70.5

36.1

Major BPS

69.8

0.49

37.5

Major PPT

88.9

0.88

0.6

84.3

23.7

Minor 5ss

39.6

-1.2

47.5

43.2

Minor BPS

0.43

1.5

73.74

38.2

Associated Gene:

Gene:

HGS

Ensembl Gene ID:

ENSAPLG00000012661

Chromosome:

PEDO01017168.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000046582

331 - 8308

7978

ENSAPLT00000013220

21 - 8308

8288