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Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01017168.1_442_610_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

442 - 610

Intron Length:

169

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGAGCACC

5'SS Class:

strong_major

3'SS Sequence:

TCCCTTTCCTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CCCCGAC

U12 Branch Point Sequence:

CCGCCCCGACCT

Flanking Amino Acid:

SMGYQPYGMQGLMSALPGQD

Intron Amino Acid Position:

660

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.5

0.84

0.9

74.9

35.3

Major BPS

43.6

-0.4

1.2

35.4

32.1

Major PPT

0.7

79.8

25.6

Minor 5ss

35.2

-1.7

2.8

43.7

Minor BPS

41.8

-0.5

54.72

46.6

Associated Gene:

Gene:

HGS

Ensembl Gene ID:

ENSAPLG00000012661

Chromosome:

PEDO01017168.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000046582

331 - 8308

7978

ENSAPLT00000013220

21 - 8308

8288