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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01017168.1_5180_7113_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5180 - 7113
Intron Length:
1934

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAACTTA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCCCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAG
U12 Branch Point Sequence:
TTTTTCTCAGGC
Flanking Amino Acid:
TMEELKEILKRQVEASVRSK
Intron Amino Acid Position:
65

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
1
77.4
33.8
Major BPS
71
0.52
1.5
79.6
35.6
Major PPT
90.6
0.91
0.6
85.8
21.3
Minor 5ss
46.8
-0.3
3
64.4
47
Minor BPS
50.3
-0
2
70.1
41.5

Associated Gene:

Gene:
HGS
Ensembl Gene ID:
ENSAPLG00000012661
Chromosome:
PEDO01017168.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046582
331 - 8308
7978
ENSAPLT00000013220
21 - 8308
8288