Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01017168.1_7207_7733_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

7207 - 7733

Intron Length:

527

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAACTTCA

5'SS Class:

strong_major

3'SS Sequence:

TTTGCCCTCGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GGCTAAT

U12 Branch Point Sequence:

GGCAGGCTAATG

Flanking Amino Acid:

NPHVALYALEVMESVVKNCG

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.7

0.77

1.1

77.7

33.5

Major BPS

61.6

0.29

1.3

63.6

42.5

Major PPT

79.4

0.66

0.8

73.5

31.4

Minor 5ss

-0.4

2.5

59.7

44.7

Minor BPS

33.9

-1.3

2.3

33.97

40.2

Associated Gene:

Gene:

HGS

Ensembl Gene ID:

ENSAPLG00000012661

Chromosome:

PEDO01017168.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000046582

331 - 8308

7978

ENSAPLT00000013220

21 - 8308

8288