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Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01017168.1_728_1042_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

728 - 1042

Intron Length:

315

Sequence Information:

Terminal Dinucleotides:

GC-AG

5'SS Sequence:

CAG|GCAAGCAAA

5'SS Class:

strong_major

3'SS Sequence:

CTTTCCTCCCCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CTCTCAC

U12 Branch Point Sequence:

CACCTCTCACCA

Flanking Amino Acid:

YQPTPTQGYQNAASQSQSIP

Intron Amino Acid Position:

621

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

92.3

0.9

41.2

Major BPS

72.7

0.56

30.1

Major PPT

81.1

0.7

73.3

31.6

Minor 5ss

28.4

-2.5

3.8

46.4

Minor BPS

44.6

-0.4

1.8

49.46

41.5

Associated Gene:

Gene:

HGS

Ensembl Gene ID:

ENSAPLG00000012661

Chromosome:

PEDO01017168.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000046582

331 - 8308

7978

ENSAPLT00000013220

21 - 8308

8288