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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01017168.1_7810_8129_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7810 - 8129
Intron Length:
320

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTGAGTGCC
5'SS Class:
major
3'SS Sequence:
TGTCTCCATCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTCCAT
U12 Branch Point Sequence:
TCTGTCTCCATC
Flanking Amino Acid:
MIRQGDTQAKYAVNAIK
Intron Amino Acid Position:
8

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.3
0.5
1
63.4
35.3
Major BPS
64.7
0.37
1.3
74.7
40
Major PPT
75.4
0.57
0.9
66.7
39.7
Minor 5ss
30.7
-2.2
3.1
41.6
38.8
Minor BPS
45.6
-0.3
2
57.18
42.5

Associated Gene:

Gene:
HGS
Ensembl Gene ID:
ENSAPLG00000012661
Chromosome:
PEDO01017168.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013220
21 - 8308
8288