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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01017210.1_10832_15643_F

Intron Information:

Intron Rank:
143688
Intron Class:
major
Intron Phase:
Intron Coordinates:
10832 - 15643
Intron Length:
4812

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAC|GTAAGTCGG
5'SS Class:
major
3'SS Sequence:
CCTTTGCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAA
U12 Branch Point Sequence:
GCTGATTTAAAA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.3
0.6
1.3
63.6
48.1
Major BPS
81.6
0.78
0.8
82
24.9
Major PPT
83.4
0.75
0.8
80.3
31.8
Minor 5ss
35
-1.7
2.9
40.6
38.7
Minor BPS
49.2
-0
1.7
57.99
41.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027424
Chromosome:
PEDO01017210.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023683
9639 - 15918
6280