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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01017213.1_2123_2421_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2123 - 2421
Intron Length:
299

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTAAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
TTTCCCTCTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
CGTTTCTCACCC
Flanking Amino Acid:
HMAVAREDLDKVLNYCRVFT
Intron Amino Acid Position:
187

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.1
0.85
0.9
80.4
26.8
Major BPS
85
0.87
0.8
85.6
23
Major PPT
85.6
0.8
0.7
77.5
31.2
Minor 5ss
33.7
-1.9
3.2
40.3
40.1
Minor BPS
50
-0
1.9
62.67
42.9

Associated Gene:

Gene:
TNPO3
Ensembl Gene ID:
ENSAPLG00000005946
Chromosome:
PEDO01017213.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006206
68 - 5817
5750