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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01017213.1_2598_3589_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2598 - 3589
Intron Length:
992

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCCCGGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GGCTCAT
U12 Branch Point Sequence:
TTTTTTTTCCCC
Flanking Amino Acid:
KLLSLLFEVLQQDKTSSNLH
Intron Amino Acid Position:
129

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.8
85.7
25.5
Major BPS
62
0.3
1.3
65.3
43.7
Major PPT
77.6
0.62
0.9
74.3
30.8
Minor 5ss
40.8
-1
3
55
43.6
Minor BPS
44.1
-0.4
3.6
72.92
38.9

Associated Gene:

Gene:
TNPO3
Ensembl Gene ID:
ENSAPLG00000005946
Chromosome:
PEDO01017213.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006206
68 - 5817
5750