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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01017213.1_339_417_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
339 - 417
Intron Length:
79

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTGAGTGCT
5'SS Class:
major
3'SS Sequence:
AAACCTGCTTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
ATGTTCACAATT
Flanking Amino Acid:
IMASIAKSVDHSSRTSSRAP
Intron Amino Acid Position:
349

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.7
0.54
1
69
35.8
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
64.1
0.32
1
59
41.8
Minor 5ss
32.1
-2
3.3
47.2
42.3
Minor BPS
50.7
0.1
1.8
71.2
40

Associated Gene:

Gene:
TNPO3
Ensembl Gene ID:
ENSAPLG00000005946
Chromosome:
PEDO01017213.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006206
68 - 5817
5750