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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01017213.1_964_1234_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
964 - 1234
Intron Length:
271

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAC|GTAAGGGTG
5'SS Class:
major
3'SS Sequence:
TGCCCCCCTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
GTTGTTTTAACA
Flanking Amino Acid:
ARHCQLDSDHEGVPEETDDF
Intron Amino Acid Position:
283

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.9
0.54
1.3
67.8
43.5
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
68.2
0.41
0.8
58.8
33
Minor 5ss
34.2
-1.8
3.7
45.6
43.3
Minor BPS
69.8
0.62
1.3
75.16
36.6

Associated Gene:

Gene:
TNPO3
Ensembl Gene ID:
ENSAPLG00000005946
Chromosome:
PEDO01017213.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006206
68 - 5817
5750