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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01017240.1_938_1066_F

Intron Information:

Intron Rank:
128259
Intron Class:
major
Intron Phase:
Intron Coordinates:
938 - 1066
Intron Length:
129

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGCTGGG
5'SS Class:
major
3'SS Sequence:
CATTTTGTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTCTTTTTCATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.8
0.47
1.2
58
47.1
Major BPS
100
1.24
0.5
100
0
Major PPT
83.1
0.74
0.9
80.5
36.7
Minor 5ss
36.2
-1.6
3.4
49.2
47.1
Minor BPS
60.5
0.41
1.7
78.3
39.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019069
Chromosome:
PEDO01017240.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030225
21 - 1729
1709