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Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01017261.1_219_317_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

219 - 317

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ACG|GTGAGTGCC

5'SS Class:

strong_major

3'SS Sequence:

GGCGGTCCCGCAG|A

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

CCCTAAT

U12 Branch Point Sequence:

CGCCCCCTAATC

Flanking Amino Acid:

ALCQLGKYTTNNSSEQRVSL

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.5

0.74

0.9

69.7

35.1

Major BPS

69.6

0.49

1.1

69.5

Major PPT

58.9

0.2

50.1

39.3

Minor 5ss

-2.4

3.1

36.8

40.4

Minor BPS

49.9

-0

1.7

57.2

41.5

Associated Gene:

Gene:

RARA

Ensembl Gene ID:

ENSAPLG00000021187

Chromosome:

PEDO01017261.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000017316

21 - 1057

1037