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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01017309.1_7630_7909_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7630 - 7909
Intron Length:
280

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGGACA
5'SS Class:
major
3'SS Sequence:
CCCTGTGCTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GCCCCAC
U12 Branch Point Sequence:
CGTGCCCCACGT
Flanking Amino Acid:
RPCPATEGCPEEEPWGEWSP
Intron Amino Acid Position:
59

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.6
0.63
1
68.4
38.2
Major BPS
42.9
-0.4
1.3
46
38.7
Major PPT
71.2
0.48
0.9
64.3
36.7
Minor 5ss
25.7
-2.8
3.1
31.1
42.7
Minor BPS
37.3
-0.8
2.2
53.17
47.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023122
Chromosome:
PEDO01017309.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025683
3944 - 8084
4141